title: "Meta-analysis of genes"
subtitle: "Draft, 25-05-2025v6c"
output:
html_document:
toc: true
toc_float:
collapsed: false
smooth_scroll: false
code_folding: hide
number_sections: false
theme: spacelab
---
# MA_HC_Astrocitos_FM {- .tabset .tabset-fade .tabset-pills}
```r
library(dplyr)
library(knitr)
library(DT)
load("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/MA_HC_Astrocitos_FM.RData")
```ENSG00000008226
Statistics of ENSG00000008226 meta-analisys
kable(sig.genes.df['ENSG00000008226',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000008226 | DLEC1 | -1.456413 | -1.275382 | -1.094351 | 0 | 2435.702 | 0 | 0.0923645 | 0.0189902 | 99.91789 | 1217.851 | 0 | 0 | 39.76525 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.2994023 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000008226_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000008226_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000008226_INFLUENCE.png")
ENSG00000077327
Statistics of ENSG00000077327 meta-analisys
kable(sig.genes.df['ENSG00000077327',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000077327 | SPAG6 | -1.254338 | -1.144909 | -1.035481 | 0 | 9590.838 | 0 | 0.0558321 | 0.0065552 | 99.97915 | 4795.419 | 0 | 0 | 89.5905 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.2301686 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000077327_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000077327_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000077327_INFLUENCE.png")
ENSG00000095637
Statistics of ENSG00000095637 meta-analisys
kable(sig.genes.df['ENSG00000095637',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000095637 | SORBS1 | 0.8139587 | 0.9057628 | 0.9975668 | 0 | 1.122131 | 0.5706008 | 0.0468397 | 0 | 0 | 1 | 0 | 0 | 79.4942 | 3 | 3 | GSE163577 | 0.592888 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000095637_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000095637_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000095637_INFLUENCE.png")
ENSG00000112319
Statistics of ENSG00000112319 meta-analisys
kable(sig.genes.df['ENSG00000112319',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000112319 | EYA4 | -3.597182 | -3.38087 | -3.164558 | 0 | 10043.15 | 0 | 0.1103655 | 0.0315218 | 99.98009 | 5021.573 | 0 | 0 | 201.7012 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.5896181 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000112319_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000112319_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000112319_INFLUENCE.png")
ENSG00000112539
Statistics of ENSG00000112539 meta-analisys
kable(sig.genes.df['ENSG00000112539',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000112539 | C6orf118 | -5.99796 | -5.240023 | -4.482086 | 0 | 6825.43 | 0 | 0.3867097 | 0.4356175 | 99.9707 | 3412.715 | 0 | 0 | 38.27099 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.9163223 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000112539_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000112539_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000112539_INFLUENCE.png")
ENSG00000122735
Statistics of ENSG00000122735 meta-analisys
kable(sig.genes.df['ENSG00000122735',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000122735 | DNAI1 | -7.976469 | -7.578922 | -7.181375 | 0 | 29553.68 | 0 | 0.2028339 | 0.1168478 | 99.99323 | 14776.84 | 0 | 0 | 300.7094 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.8428961 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000122735_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000122735_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000122735_INFLUENCE.png")
ENSG00000137098
Statistics of ENSG00000137098 meta-analisys
kable(sig.genes.df['ENSG00000137098',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000137098 | SPAG8 | -2.330851 | -2.080992 | -1.831133 | 0 | 3012.989 | 0 | 0.1274816 | 0.0371117 | 99.93362 | 1506.495 | 0 | 0 | 56.18879 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.3368023 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000137098_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000137098_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000137098_INFLUENCE.png")
ENSG00000137473
Statistics of ENSG00000137473 meta-analisys
kable(sig.genes.df['ENSG00000137473',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000137473 | TTC29 | -6.663464 | -5.991522 | -5.319581 | 0 | 18888.54 | 0 | 0.3428337 | 0.3466716 | 99.98941 | 9444.269 | 0 | 0 | 64.64572 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.9518189 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000137473_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000137473_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000137473_INFLUENCE.png")
ENSG00000139865
Statistics of ENSG00000139865 meta-analisys
kable(sig.genes.df['ENSG00000139865',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000139865 | TTC6 | -5.502408 | -5.205712 | -4.909016 | 0 | 15065.61 | 0 | 0.1513781 | 0.0617658 | 99.98672 | 7532.806 | 0 | 0 | 254.5993 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.6957715 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000139865_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000139865_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000139865_INFLUENCE.png")
ENSG00000142621
Statistics of ENSG00000142621 meta-analisys
kable(sig.genes.df['ENSG00000142621',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000142621 | FHAD1 | -6.157032 | -5.447065 | -4.737097 | 0 | 10688.58 | 0 | 0.3622351 | 0.3848411 | 99.98129 | 5344.291 | 0 | 0 | 47.42236 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.9357641 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000142621_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000142621_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000142621_INFLUENCE.png")
ENSG00000149927
Statistics of ENSG00000149927 meta-analisys
kable(sig.genes.df['ENSG00000149927',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000149927 | DOC2A | -2.138408 | -1.87501 | -1.611613 | 0 | 2228.02 | 0 | 0.1343891 | 0.0410871 | 99.91023 | 1114.01 | 0 | 0 | 40.61269 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.3311095 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000149927_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000149927_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000149927_INFLUENCE.png")
ENSG00000154099
Statistics of ENSG00000154099 meta-analisys
kable(sig.genes.df['ENSG00000154099',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000154099 | DNAAF1 | -5.93459 | -5.53098 | -5.12737 | 0 | 23552.23 | 0 | 0.2059272 | 0.1230304 | 99.99151 | 11776.11 | 0 | 0 | 154.7441 | 3 | 1 | Study43,GSE163577,syn52293442_hc | 0.9042753 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000154099_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000154099_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000154099_INFLUENCE.png")
ENSG00000158486
Statistics of ENSG00000158486 meta-analisys
kable(sig.genes.df['ENSG00000158486',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000158486 | DNAH3 | -1.465881 | -1.343438 | -1.220995 | 0 | 6742.042 | 0 | 0.0624721 | 0.0085221 | 99.97034 | 3371.021 | 0 | 0 | 98.67245 | 3 | 1 | Study43,GSE163577,syn52293442_hc | 0.2736191 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000158486_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000158486_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000158486_INFLUENCE.png")
ENSG00000160188
Statistics of ENSG00000160188 meta-analisys
kable(sig.genes.df['ENSG00000160188',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000160188 | RSPH1 | -7.092758 | -6.533973 | -5.975189 | 0 | 15922.73 | 0 | 0.2850995 | 0.2351269 | 99.98744 | 7961.366 | 0 | 0 | 112.2849 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.8959406 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000160188_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000160188_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000160188_INFLUENCE.png")
ENSG00000163491
Statistics of ENSG00000163491 meta-analisys
kable(sig.genes.df['ENSG00000163491',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000163491 | NEK10 | -4.882345 | -4.501065 | -4.119785 | 0 | 20276.52 | 0 | 0.1945343 | 0.110343 | 99.99014 | 10138.26 | 0 | 0 | 114.4254 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.9188066 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000163491_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000163491_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000163491_INFLUENCE.png")
ENSG00000167858
Statistics of ENSG00000167858 meta-analisys
kable(sig.genes.df['ENSG00000167858',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000167858 | TEKT1 | -2.740393 | -2.422189 | -2.103985 | 0 | 4745.735 | 0 | 0.1623521 | 0.0748436 | 99.95786 | 2372.868 | 0 | 0 | 46.67929 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.8428589 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000167858_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000167858_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000167858_INFLUENCE.png")
ENSG00000171962
Statistics of ENSG00000171962 meta-analisys
kable(sig.genes.df['ENSG00000171962',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000171962 | DRC3 | -7.730111 | -7.158775 | -6.587439 | 0 | 12098.1 | 0 | 0.2915033 | 0.2404268 | 99.98347 | 6049.051 | 0 | 0 | 129.0962 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.8321641 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000171962_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000171962_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000171962_INFLUENCE.png")
ENSG00000176601
Statistics of ENSG00000176601 meta-analisys
kable(sig.genes.df['ENSG00000176601',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000176601 | MAP3K19 | -6.65708 | -6.030891 | -5.404702 | 0 | 7900.097 | 0 | 0.3194901 | 0.2906209 | 99.97468 | 3950.048 | 0 | 0 | 75.69692 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.8503317 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000176601_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000176601_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000176601_INFLUENCE.png")
ENSG00000182329
Statistics of ENSG00000182329 meta-analisys
kable(sig.genes.df['ENSG00000182329',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000182329 | KIAA2012 | -8.04583 | -7.033873 | -6.021916 | 0 | 20271.7 | 0 | 0.516314 | 0.7922147 | 99.99013 | 10135.85 | 0 | 0 | 38.6816 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.9732881 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000182329_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000182329_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000182329_INFLUENCE.png")
ENSG00000197057
Statistics of ENSG00000197057 meta-analisys
kable(sig.genes.df['ENSG00000197057',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000197057 | DTHD1 | -3.331806 | -3.123039 | -2.914271 | 0 | 10729.63 | 0 | 0.106516 | 0.0304699 | 99.98136 | 5364.814 | 0 | 0 | 184.7072 | 3 | 2 | Study43,GSE163577,syn52293442_hc | 0.6859789 | Study43,GSE163577,syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000197057_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000197057_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/FM/plots/ENSG00000197057_INFLUENCE.png")
sessionInfo
date()## [1] "Sun May 25 15:47:58 2025"sessionInfo()## R version 4.2.2 (2022-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /opt/sci-soft/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64/libflexiblas.so.3.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.10.4 DT_0.26 knitr_1.41 ggplot2_3.5.2 dplyr_1.0.10 limma_3.54.0
## [7] tibble_3.1.8 metafor_3.8-1 metadat_1.2-0 Matrix_1.5-3 Biobase_2.58.0 BiocGenerics_0.44.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.2 purrr_0.3.5 lattice_0.20-45 vctrs_0.6.5
## [7] generics_0.1.3 htmltools_0.5.4 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2 rlang_1.1.6
## [13] pillar_1.8.1 jquerylib_0.1.4 glue_1.6.2 withr_2.5.0 DBI_1.1.3 RColorBrewer_1.1-3
## [19] lifecycle_1.0.3 stringr_1.5.0 gtable_0.3.1 htmlwidgets_1.6.0 evaluate_0.19 labeling_0.4.2
## [25] fastmap_1.1.0 crosstalk_1.2.0 fansi_1.0.3 highr_0.9 scales_1.4.0 cachem_1.0.6
## [31] jsonlite_1.8.4 farver_2.1.1 png_0.1-8 digest_0.6.31 stringi_1.7.8 grid_4.2.2
## [37] mathjaxr_1.6-0 cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4 lazyeval_0.2.2
## [43] dichromat_2.0-0.1 tidyr_1.2.1 pkgconfig_2.0.3 ellipsis_0.3.2 data.table_1.14.6 assertthat_0.2.1
## [49] rmarkdown_2.19 httr_1.4.4 rstudioapi_0.14 R6_2.5.1 nlme_3.1-161 compiler_4.2.2